PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016725-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 336aa    MW: 37202.4 Da    PI: 6.973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016725-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13102152255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +++YI++Lq
  WALNUT_00016725-RA 102 RISHITVERNRRKQMNDHLSVLRSLMPCF---YVKRGDQASIIGGVIDYINELQ 152
                         889*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1799170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.799100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-13102163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-12102156No hitNo description
PfamPF000102.1E-10102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDVFEEHEFG DTSLAEDDLF SIFESLESVA DFPLIDEGVV GTKELGEEIN TAPRFFSQKS  60
TSSSALQDQS GTELETSPKS KRQKLSGTTT SSEETNQEGQ HRISHITVER NRRKQMNDHL  120
SVLRSLMPCF YVKRGDQASI IGGVIDYINE LQQVLHSLEA KKQRKVYSTH HEVVVLSPRL  180
VSSPRPSPLS PRSKLPLSPR LNLPISPRTP QPSIPYKPRK KLQLQAAGAG YLSPTMPSSL  240
EPSPASSSTT SSINDNVNEL VANSKSPIAE VEVKFSGPNL LLKTVSTRIP GQAMKIISAL  300
EDLSLEILHL RIITVDETIL INSFTIKVII KLYLYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038955.11e-141Basic helix-loop-helix DNA-binding superfamily protein
SwissprotQ700C76e-87SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A061G1J31e-141A0A061G1J3_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGGLYMA04G41710.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.16e-80bHLH family protein